ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ifcE1 - ECOD Domain | ECOD

ECOD/Domains/e6ifcE1

e6ifcE1

UID: 002575195

PDB

Range: E:1-132
PDB: 6IFC chain E(all domains)
UniProt: Q8ZM86 (all domains)
Gene: vapC

Molecule: tRNA(fMet)-specific endonuclease VapC

3D Structure

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Related Domains

Browse other domains in PIN →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupPIN domain-like(2006.1.4)

FFamilyPIN(2006.1.4.2)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PIN domain

ClanCL0280PIN

External Links

ECOD PDB View: 6IFC RCSB PDB: 6IFC PDBe: 6IFC UniProt: Q8ZM86

Downloads

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