ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p08D1 - ECOD Domain | ECOD

ECOD/Domains/e6p08D1

e6p08D1

UID: 002575366

PDB

Range: D:126-253
PDB: 6P08 chain D(all domains)
UniProt: P05058 (all domains)
Gene: knt

Molecule: Kanamycin nucleotidyltransferase

3D Structure

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Related Domains

Browse other domains in KNTase_C →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupHEPN(601.7)

TT-groupNucleotidyltransferase substrate binding subunit/domain(601.7.1)

FFamilyKNTase_C(601.7.1.5)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Pyrophosphoric acidPPV
drugDrugBank DB04160

Pfam Families

PF07827KNTase_C

KNTase C-terminal domain

ClanCL0291KNTase_C

External Links

ECOD PDB View: 6P08 RCSB PDB: 6P08 PDBe: 6P08 UniProt: P05058

Downloads

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Magnesium ion

metal

NeomycinNMY

Shown in the structure viewer. Drug annotations from DrugDomain.