ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p08D2 - ECOD Domain | ECOD

ECOD/Domains/e6p08D2

e6p08D2

UID: 002575367

PDB

Range: D:2-125
PDB: 6P08 chain D(all domains)
UniProt: P05058 (all domains)
Gene: knt

Molecule: Kanamycin nucleotidyltransferase

3D Structure

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Related Domains

Browse other domains in NTP_transf_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyNTP_transf_2(316.1.1.2)

Ligands

in contact, ≤ 4 Å

FramycetinNMY
drugDrugBank DB00452
Pyrophosphoric acidPPV
drugDrugBank DB04160
Adenosine monophosphate

Pfam Families

PF01909NTP_transf_2

Nucleotidyltransferase domain

ClanCL0260NTP_transf

External Links

ECOD PDB View: 6P08 RCSB PDB: 6P08 PDBe: 6P08 UniProt: P05058

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.