ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6lhtC1 - ECOD Domain | ECOD

ECOD/Domains/e6lhtC1

e6lhtC1

UID: 002575588

PDB

Range: C:71-295
PDB: 6LHT chain C(all domains)
UniProt: A0A2S1BJ89 (all domains)

Molecule: VP1 protein

3D Structure

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Related Domains

Browse other domains in Rhv_5 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv_5(10.2.1.69)

Ligands

in contact, ≤ 4 Å

SphingosineSPH

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Picornavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6LHT RCSB PDB: 6LHT PDBe: 6LHT UniProt: A0A2S1BJ89

Downloads

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