ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vdkM1 - ECOD Domain | ECOD

ECOD/Domains/e6vdkM1

e6vdkM1

UID: 002576076

PDB

Range: M:222-270
PDB: 6VDK chain M(all domains)
UniProt: F2WR39 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

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Related Domains

Browse other domains in IN_DBD_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyIN_DBD_C(4.1.1.8)

Ligands

in contact, ≤ 4 Å

DolutegravirDLU
drugDrugBank DB08930

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00552IN_DBD_C

Integrase DNA binding domain

ClanCL0010SH3

External Links

ECOD PDB View: 6VDK RCSB PDB: 6VDK PDBe: 6VDK UniProt: F2WR39

Downloads

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