ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6vdkP1 - ECOD Domain | ECOD

ECOD/Domains/e6vdkP1

e6vdkP1

UID: 002576077

PDB

Range: P:222-268
PDB: 6VDK chain P(all domains)
UniProt: F2WR39 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

Loading viewer...

Related Domains

Browse other domains in IN_DBD_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyIN_DBD_C(4.1.1.8)

Ligands

in contact, ≤ 4 Å

DolutegravirDLU
drugDrugBank DB08930

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00552IN_DBD_C

Integrase DNA binding domain

ClanCL0010SH3

External Links

ECOD PDB View: 6VDK RCSB PDB: 6VDK PDBe: 6VDK UniProt: F2WR39

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure