ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4p4kB2 - ECOD Domain | ECOD

ECOD/Domains/e4p4kB2

e4p4kB2

UID: 002576676

PDB

Range: B:-25-89
PDB: 4P4K chain B(all domains)
UniProt: P04440 (all domains)
Gene: HLA-DPB1

Molecule: mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain

3D Structure

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Related Domains

Browse other domains in MHC_II_beta →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMHC antigen-recognition domain(233)

HH-groupMHC antigen-recognition domain(233.1)

TT-groupMHC antigen-recognition domain(233.1.1)

FFamilyMHC_II_beta(233.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Beryllium0BE
metal
Sodium ion

Pfam Families

PF00969MHC_II_beta

Class II histocompatibility antigen, beta domain

ClanCL0343MHC

External Links

ECOD PDB View: 4P4K RCSB PDB: 4P4K PDBe: 4P4K UniProt: P04440

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.