ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6khjB1 - ECOD Domain | ECOD

ECOD/Domains/e6khjB1

e6khjB1

UID: 002578410

PDB

Range: B:8-495
PDB: 6KHJ chain B(all domains)
UniProt: Q8DMR6 (all domains)
Gene: ndhB

Molecule: NAD(P)H-quinone oxidoreductase subunit 2

3D Structure

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Related Domains

Browse other domains in Proton_antipo_M,Ndh2_N →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium/proton antiporter subunits-like(3281)

HH-groupSodium/proton antiporter subunits-like(3281.1)

TT-groupNADH-quinone oxidoreductase subunit L (NuoL)-related(3281.1.1)

FFamilyProton_antipo_M,Ndh2_N(3281.1.1.7)

Ligands

in contact, ≤ 4 Å

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG
drugDrugBank DB02043
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

+ 1 additive (Dodecyl-beta-d-maltoside)

Pfam Families

PF00361Proton_antipo_M

NADH:quinone oxidoreductase/Mrp antiporter, TM

ClanCL0425ComplexI-N

NAD(P)H-quinone oxidoreductase subunit 2 N-terminal

External Links

ECOD PDB View: 6KHJ RCSB PDB: 6KHJ PDBe: 6KHJ UniProt: Q8DMR6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dodecyl-beta-d-maltosideLMT

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.