ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6khjH1 - ECOD Domain | ECOD

ECOD/Domains/e6khjH1

e6khjH1

UID: 002578416

PDB

Range: H:93-286
PDB: 6KHJ chain H(all domains)
UniProt: Q8DJD9 (all domains)
Gene: ndhH

Molecule: NAD(P)H-quinone oxidoreductase subunit H

3D Structure

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Related Domains

Browse other domains in Complex1_49kDa →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025)

HH-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1)

TT-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1.1)

FFamilyComplex1_49kDa(4025.1.1.1)

Ligands

in contact, ≤ 4 Å

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG
drugDrugBank DB02043within 5 Å only
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

Pfam Families

PF00346Complex1_49kDa

Respiratory-chain NADH dehydrogenase, 49 Kd subunit

External Links

ECOD PDB View: 6KHJ RCSB PDB: 6KHJ PDBe: 6KHJ UniProt: Q8DJD9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.