ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6v3kD1 - ECOD Domain | ECOD

ECOD/Domains/e6v3kD1

e6v3kD1

UID: 002579210

PDB

Range: D:222-268
PDB: 6V3K chain D(all domains)
UniProt: P39476 (all domains)
Gene: sso7d

Molecule: Chimeric Sso7d and HIV-1 integrase

3D Structure

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Related Domains

Browse other domains in IN_DBD_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyIN_DBD_C(4.1.1.8)

Ligands

in contact, ≤ 4 Å

4-azanyl-N-[[2,4-bis(fluoranyl)phenyl]methyl]-1-oxidanyl-2-oxidanylidene-6-(5-oxidanylpentyl)-1,8-naphthyridine-3-carboxamideQUW

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00552IN_DBD_C

Integrase DNA binding domain

ClanCL0010SH3

External Links

ECOD PDB View: 6V3K RCSB PDB: 6V3K PDBe: 6V3K UniProt: P39476

Downloads

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