ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6jevB1 - ECOD Domain | ECOD

ECOD/Domains/e6jevB1

e6jevB1

UID: 002580122

PDB

Range: B:3-173
PDB: 6JEV chain B(all domains)
UniProt: A0A0J1A8B1 (all domains)
Gene: def_1

Molecule: Peptide deformylase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acidK2U
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 6JEV RCSB PDB: 6JEV PDBe: 6JEV UniProt: A0A0J1A8B1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure