ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6jf5A1 - ECOD Domain | ECOD

ECOD/Domains/e6jf5A1

e6jf5A1

UID: 002580134

PDB

Range: A:2-158
PDB: 6JF5 chain A(all domains)
UniProt: A0A098SKQ8 (all domains)
Gene: def

Molecule: Peptide deformylase

3D Structure

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Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

(3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acidK2U
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 6JF5 RCSB PDB: 6JF5 PDBe: 6JF5 UniProt: A0A098SKQ8

Downloads

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