ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6jfdC1 - ECOD Domain | ECOD

ECOD/Domains/e6jfdC1

e6jfdC1

UID: 002580152

PDB

Range: C:4-170
PDB: 6JFD chain C(all domains)
UniProt: A0A1C7BES9 (all domains)

Molecule: Peptide deformylase

3D Structure

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Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acidK1U
NICKEL (II) IONNI
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 6JFD RCSB PDB: 6JFD PDBe: 6JFD UniProt: A0A1C7BES9

Downloads

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