ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6nvdD1 - ECOD Domain | ECOD

ECOD/Domains/e6nvdD1

e6nvdD1

UID: 002580277

PDB

Range: D:0-225
PDB: 6NVD chain D(all domains)
UniProt: P9WPQ5 (all domains)
Gene: bioD

Molecule: ATP-dependent dethiobiotin synthetase BioD

3D Structure

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Related Domains

Browse other domains in AAA_26 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA_26(2004.1.1.201)

Ligands

in contact, ≤ 4 Å

2',5'-dideoxy-5'-[4-({[(1S,2R)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetyl}amino)-1H-1,2,3-triazol-1-yl]cytidineL4S

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

AAA domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6NVD RCSB PDB: 6NVD PDBe: 6NVD UniProt: P9WPQ5

Downloads

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