ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6tjvF1 - ECOD Domain | ECOD

ECOD/Domains/e6tjvF1

e6tjvF1

UID: 002580922

PDB

Range: F:5-604
PDB: 6TJV chain F(all domains)
UniProt: Q8DKF5 (all domains)
Gene: ndhF3

Molecule: NADH dehydrogenase subunit 5

3D Structure

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Related Domains

Browse other domains in Proton_antipo_M,Proton_antipo_N →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium/proton antiporter subunits-like(3281)

HH-groupSodium/proton antiporter subunits-like(3281.1)

TT-groupNADH-quinone oxidoreductase subunit L (NuoL)-related(3281.1.1)

FFamilyProton_antipo_M,Proton_antipo_N(3281.1.1.2)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE

Pfam Families

PF00361Proton_antipo_M

NADH:quinone oxidoreductase/Mrp antiporter, TM

ClanCL0425ComplexI-N

PF00662Proton_antipo_N

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus

External Links

ECOD PDB View: 6TJV RCSB PDB: 6TJV PDBe: 6TJV UniProt: Q8DKF5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Zinc ionZN

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.