ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6imaA1 - ECOD Domain | ECOD

ECOD/Domains/e6imaA1

e6imaA1

UID: 002582278

PDB

Range: A:38-348
PDB: 6IMA chain A(all domains)
UniProt: P0CB42 (all domains)
Gene: Alkbh1

Molecule: Nucleic acid dioxygenase ALKBH1

3D Structure

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Related Domains

Browse other domains in 2OG-FeII_Oxy_2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamily2OG-FeII_Oxy_2(10.12.1.51)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF135322OG-FeII_Oxy_2

2OG-Fe(II) oxygenase superfamily

ClanCL0029Cupin

External Links

ECOD PDB View: 6IMA RCSB PDB: 6IMA PDBe: 6IMA UniProt: P0CB42

Downloads

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