ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kdtD1 - ECOD Domain | ECOD

ECOD/Domains/e6kdtD1

e6kdtD1

UID: 002582492

PDB

Range: D:568-853
PDB: 6KDT chain D(all domains)
UniProt: Q9UBC3 (all domains)
Gene: DNMT3B

Molecule: DNA (cytosine-5)-methyltransferase 3B

3D Structure

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Related Domains

Browse other domains in DNA_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyDNA_methylase(2003.1.5.1)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 1 additive (Formic acid)

Formic acidFMT
DrugBank DB01942

Shown in the structure viewer.

Pfam Families

PF00145DNA_methylase

C-5 cytosine-specific DNA methylase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6KDT RCSB PDB: 6KDT PDBe: 6KDT UniProt: Q9UBC3

Downloads

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Drug annotations from DrugDomain.