ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o04D2 - ECOD Domain | ECOD

ECOD/Domains/e6o04D2

e6o04D2

UID: 002582590

PDB

Range: D:2-207
PDB: 6O04 chain D(all domains)
UniProt: P9WK11 (all domains)
Gene: menD

Molecule: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_N(7574.1.1.7)

Ligands

in contact, ≤ 4 Å

1,4-dihydroxy-2-naphthoic acidDNA

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02776TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 6O04 RCSB PDB: 6O04 PDBe: 6O04 UniProt: P9WK11

Downloads

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