ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qkvB1 - ECOD Domain | ECOD

ECOD/Domains/e6qkvB1

e6qkvB1

UID: 002582860

PDB

Range: B:4-158
PDB: 6QKV chain B(all domains)
UniProt: A0A071LCY6 (all domains)
Gene: trmL

Molecule: tRNA (cytidine(34)-2'-O)-methyltransferase

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 6QKV RCSB PDB: 6QKV PDBe: 6QKV UniProt: A0A071LCY6

Downloads

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