ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rgdA1 - ECOD Domain | ECOD

ECOD/Domains/e6rgdA1

e6rgdA1

UID: 002582963

PDB

Range: A:96-264
PDB: 6RGD chain A(all domains)
UniProt: Q8Y8D7 (all domains)
Gene: nadK1

Molecule: NAD kinase 1

3D Structure

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Related Domains

Browse other domains in NAD_kinase_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupNAD kinase beta sandwich domain-like(4004)

HH-groupNAD kinase beta sandwich domain-like(4004.1)

TT-groupNAD kinase beta sandwich domain-like(4004.1.1)

FFamilyNAD_kinase_C(4004.1.1.3)

Ligands

in contact, ≤ 4 Å

(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[4-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]but-3-ynylamino]methyl]oxolane-3,4-diolK2W

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Pfam Families

PF20143NAD_kinase_C

ATP-NAD kinase C-terminal domain

ClanCL0701NAD_kinase_C

External Links

ECOD PDB View: 6RGD RCSB PDB: 6RGD PDBe: 6RGD UniProt: Q8Y8D7

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.