ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vczB1 - ECOD Domain | ECOD

ECOD/Domains/e6vczB1

e6vczB1

UID: 002584059

PDB

Range: B:114-239
PDB: 6VCZ chain B(all domains)
UniProt: P17562 (all domains)
Gene: SAM2

Molecule: S-adenosylmethionine synthase 2

3D Structure

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Related Domains

Browse other domains in S-AdoMet_synt_M →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupS-adenosylmethionine synthetase(327.17)

TT-groupS-adenosylmethionine synthetase(327.17.1)

FFamilyS-AdoMet_synt_M(327.17.1.3)

Ligands

in contact, ≤ 4 Å

2-MethoxyethanolMXE
drugDrugBank DB02806
(R)-Propylene glycolPGR
drugDrugBank DB02159
Magnesium ion

Pfam Families

PF02772S-AdoMet_synt_M

S-adenosylmethionine synthetase, central domain

External Links

ECOD PDB View: 6VCZ RCSB PDB: 6VCZ PDBe: 6VCZ UniProt: P17562

Downloads

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metal

+ 2 additives (Triethylene glycol, Phosphate ion)

Triethylene glycolPGE
DrugBank DB02327
Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.