ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ex4B1 - ECOD Domain | ECOD

ECOD/Domains/e1ex4B1

e1ex4B1

UID: 000025860

PDB

Range: B:223-270
PDB: 1EX4 chain B(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: INTEGRASE

3D Structure

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Related Domains

Browse other domains in IN_DBD_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyIN_DBD_C(4.1.1.8)

Ligands

in contact, ≤ 4 Å

3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATECPS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00552IN_DBD_C

Integrase DNA binding domain

ClanCL0010SH3

External Links

ECOD PDB View: 1EX4 RCSB PDB: 1EX4 PDBe: 1EX4 UniProt: P04585

Downloads

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