ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6i5dA2 - ECOD Domain | ECOD

ECOD/Domains/e6i5dA2

e6i5dA2

UID: 002588516

PDB

Range: A:22-64,A:162-265
PDB: 6I5D chain A(all domains)
UniProt: Q6XEC0 (all domains)
Gene: OXA-48

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 3 additives (Glycerin, Nitrate, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
NitrateNO3

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6I5D RCSB PDB: 6I5D PDBe: 6I5D UniProt: Q6XEC0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14049

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.