ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kdjA3 - ECOD Domain | ECOD

ECOD/Domains/e6kdjA3

e6kdjA3

UID: 002588552

PDB

Range: A:1-242
PDB: 6KDJ chain A(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: HIV-1 reverse transcriptase p66 subunit

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

Lamivudine Triphosphate1RZ
Magnesium ionMG
metal

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 6KDJ RCSB PDB: 6KDJ PDBe: 6KDJ UniProt: P12497

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.