ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6i5dB2 - ECOD Domain | ECOD

ECOD/Domains/e6i5dB2

e6i5dB2

UID: 002591634

PDB

Range: B:63-163
PDB: 6I5D chain B(all domains)
UniProt: Q6XEC0 (all domains)
Gene: OXA-48

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Nitrate, Phosphate ion)

GlycerinGOL
DrugBank DB09462
NitrateNO3
DrugBank DB14049
Phosphate ion

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6I5D RCSB PDB: 6I5D PDBe: 6I5D UniProt: Q6XEC0

Downloads

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DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.