ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kdmC2 - ECOD Domain | ECOD

ECOD/Domains/e6kdmC2

e6kdmC2

UID: 002591802

PDB

Range: C:1-242
PDB: 6KDM chain C(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: HIV-1 reverse transcriptase p66 subunit

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

[[(1R,3S,5S)-3-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-2-methylidene-5-oxidanyl-cyclopentyl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphateET9
Magnesium ionMG
metal

+ 1 additive (Glycerol)

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 6KDM RCSB PDB: 6KDM PDBe: 6KDM UniProt: P12497

Downloads

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Glycerol

Shown in the structure viewer. Drug annotations from DrugDomain.