ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kdoB2 - ECOD Domain | ECOD

ECOD/Domains/e6kdoB2

e6kdoB2

UID: 002591834

PDB

Range: B:317-427
PDB: 6KDO chain B(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: HIV-1 RT p51 subunit

3D Structure

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Related Domains

Browse other domains in RVT_connect →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRNaseH-like domain in reverse transcriptase(2484.5)

TT-groupRNaseH-like domain in reverse transcriptase(2484.5.1)

FFamilyRVT_connect(2484.5.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06815RVT_connect

Reverse transcriptase connection domain

External Links

ECOD PDB View: 6KDO RCSB PDB: 6KDO PDBe: 6KDO UniProt: P12497

Downloads

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