ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vrhA1 - ECOD Domain | ECOD

ECOD/Domains/e6vrhA1

e6vrhA1

UID: 002593119

PDB

Range: A:77-617
PDB: 6VRH chain A(all domains)
UniProt: P31645 (all domains)
Gene: SLC6A4

Molecule: Sodium-dependent serotonin transporter

3D Structure

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Related Domains

Browse other domains in SNF →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium:neurotransmitter symporter family (SNF)-like(5051)

HH-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1)

TT-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1.1)

FFamilySNF(5051.1.1.1)

Ligands

in contact, ≤ 4 Å

Paroxetine8PR
drugDrugBank DB00715
N-AcetylglucosamineNAG
drugDrugBank DB00141
Chloride ion

Pfam Families

Sodium:neurotransmitter symporter family

ClanCL0062APC

External Links

ECOD PDB View: 6VRH RCSB PDB: 6VRH PDBe: 6VRH UniProt: P31645

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.