ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ldmA2 - ECOD Domain | ECOD

ECOD/Domains/e6ldmA2

e6ldmA2

UID: 002596879

PDB

Range: A:361-445
PDB: 6LDM chain A(all domains)
UniProt: P11938 (all domains)
Gene: RAP1

Molecule: DNA-binding protein RAP1

3D Structure

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Related Domains

Browse other domains in Myb_DNA-binding →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyMyb_DNA-binding(101.1.1.3)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00249Myb_DNA-binding

Myb-like DNA-binding domain

ClanCL0123HTH

External Links

ECOD PDB View: 6LDM RCSB PDB: 6LDM PDBe: 6LDM UniProt: P11938

Downloads

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