ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qr6B1 - ECOD Domain | ECOD

ECOD/Domains/e6qr6B1

e6qr6B1

UID: 002598491

PDB

Range: B:0-232
PDB: 6QR6 chain B(all domains)
UniProt: B1MDI3 (all domains)
Gene: trmD

Molecule: tRNA (guanine-N(1)-)-methyltransferase

3D Structure

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Related Domains

Browse other domains in tRNA_m1G_MT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilytRNA_m1G_MT(2488.1.1.3)

Ligands

in contact, ≤ 4 Å

5-azanyl-3-[1-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrileJCK

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01746tRNA_m1G_MT

tRNA (Guanine-1)-methyltransferase TrmD

ClanCL0098SPOUT

External Links

ECOD PDB View: 6QR6 RCSB PDB: 6QR6 PDBe: 6QR6 UniProt: B1MDI3

Downloads

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