ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4k2zA1 - ECOD Domain | ECOD

ECOD/Domains/e4k2zA1

e4k2zA1

UID: 000259942

PDB

Range: A:1-246
PDB: 4K2Z chain A(all domains)
UniProt: D9J2T9 (all domains)
Gene: RIP

Molecule: rRNA N-glycosidase

3D Structure

Loading viewer...

Related Domains

Browse other domains in RIP →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRIP/Polo-box domain(292)

HH-groupRibosome inactivating proteins (RIP)(292.1)

TT-groupRibosome inactivating proteins (RIP)(292.1.1)

FFamilyRIP(292.1.1.1)

Ligands

in contact, ≤ 4 Å

MethylethylamineETN
drugDrugBank DB02396
N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 1 additive (Glycerin)

Pfam Families

Ribosome inactivating protein

External Links

ECOD PDB View: 4K2Z RCSB PDB: 4K2Z PDBe: 4K2Z UniProt: D9J2T9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.