ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kn3C1 - ECOD Domain | ECOD

ECOD/Domains/e3kn3C1

e3kn3C1

UID: 002601134

PDB

Range: C:81-198
PDB: 3KN3 chain C(all domains)
UniProt: Q7M8V9 (all domains)
Gene: WS1370

Molecule: PUTATIVE PERIPLASMIC PROTEIN

3D Structure

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Related Domains

Browse other domains in PBP_like_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyPBP_like_2(7523.1.1.23)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Glycerin)

Citric acidCIT
DrugBank DB04272
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF12849PBP_like_2

PBP superfamily domain

ClanCL0177PBP

External Links

ECOD PDB View: 3KN3 RCSB PDB: 3KN3 PDBe: 3KN3 UniProt: Q7M8V9

Downloads

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