ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vnaA1 - ECOD Domain | ECOD

ECOD/Domains/e3vnaA1

e3vnaA1

UID: 002602230

PDB

Range: A:594-741
PDB: 3VNA chain A(all domains)
UniProt: O04379 (all domains)
Gene: AGO1

Molecule: Protein argonaute 1

3D Structure

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Related Domains

Browse other domains in Piwi,ArgoMid →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMiddle domain in Argonaute homologs(7590)

HH-groupMiddle domain in Argonaute homologs(7590.1)

TT-groupMiddle domain in Argonaute homologs(7590.1.1)

FFamilyPiwi,ArgoMid(7590.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Piwi domain

ClanCL0219RNase_H

PF16487ArgoMid

Mid domain of argonaute

External Links

ECOD PDB View: 3VNA RCSB PDB: 3VNA PDBe: 3VNA UniProt: O04379

Downloads

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