ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4wkmC1 - ECOD Domain | ECOD

ECOD/Domains/e4wkmC1

e4wkmC1

UID: 002602277

PDB

Range: C:94-289
PDB: 4WKM chain C(all domains)
UniProt: K8QNC4 (all domains)

Molecule: LysR family transcriptional regulator

3D Structure

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Related Domains

Browse other domains in LysR_substrate →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLysR_substrate(7523.1.1.15)

Ligands

in contact, ≤ 4 Å

N-acetyl-alpha-muramic acidMUB

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03466LysR_substrate

LysR substrate binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 4WKM RCSB PDB: 4WKM PDBe: 4WKM UniProt: K8QNC4

Downloads

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