ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zbjA1 - ECOD Domain | ECOD

ECOD/Domains/e5zbjA1

e5zbjA1

UID: 002603850

PDB

Range: A:2-186
PDB: 5ZBJ chain A(all domains)
UniProt: P48636 (all domains)
Gene: PA4923

Molecule: Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase

3D Structure

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Related Domains

Browse other domains in Lysine_decarbox →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMCP/YpsA-related(7563)

HH-groupMCP/YpsA-related(7563.1)

TT-groupMCP/YpsA-related(7563.1.1)

FFamilyLysine_decarbox(7563.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Glycerin, Imidazole, Phosphate ion, …)

GlycerinGOL
DrugBank DB09462
ImidazoleIMD
DrugBank DB03366
Phosphate ion

Pfam Families

PF03641Lysine_decarbox

Possible lysine decarboxylase

ClanCL0349SLOG

External Links

ECOD PDB View: 5ZBJ RCSB PDB: 5ZBJ PDBe: 5ZBJ UniProt: P48636

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.