ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6vpqA1 - ECOD Domain | ECOD

ECOD/Domains/e6vpqA1

e6vpqA1

UID: 002605219

PDB

Range: A:109-195
PDB: 6VPQ chain A(all domains)
UniProt: O43583 (all domains)
Gene: DENR

Molecule: Density-regulated protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in SUI1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupGlucose permease domain IIB-like(306)

HH-groupeIF1-like(306.3)

TT-groupeIF1-like(306.3.1)

FFamilySUI1(306.3.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Calcium ionCA
metalwithin 5 Å only

+ 2 additives (Acetate, Triethylene glycol)

Pfam Families

Translation initiation factor SUI1

External Links

ECOD PDB View: 6VPQ RCSB PDB: 6VPQ PDBe: 6VPQ UniProt: O43583

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Acetate

DrugBank DB14511

Triethylene glycolPGE

DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.