ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wbdB1 - ECOD Domain | ECOD

ECOD/Domains/e6wbdB1

e6wbdB1

UID: 002605251

PDB

Range: B:11-152
PDB: 6WBD chain B(all domains)
UniProt: B2FQ84 (all domains)
Gene: lysS

Molecule: Lysine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA_anti-codon →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilytRNA_anti-codon(2.1.1.15)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01336tRNA_anti-codon

OB-fold nucleic acid binding domain

ClanCL0021OB

External Links

ECOD PDB View: 6WBD RCSB PDB: 6WBD PDBe: 6WBD UniProt: B2FQ84

Downloads

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