ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rpnA1 - ECOD Domain | ECOD

ECOD/Domains/e6rpnA1

e6rpnA1

UID: 002607607

PDB

Range: A:31-263
PDB: 6RPN chain A(all domains)
UniProt: Q9K2N0 (all domains)
Gene: blaVIM-2

Molecule: Beta-lactamase VIM-2

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(3~{R})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acidKDZ
(3~{S})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acidKL8

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 6RPN RCSB PDB: 6RPN PDBe: 6RPN UniProt: Q9K2N0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.