ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v4mC2 - ECOD Domain | ECOD

ECOD/Domains/e5v4mC2

e5v4mC2

UID: 002610253

PDB

Range: C:248-339
PDB: 5V4M chain C(all domains)
UniProt: P01911 (all domains)
Gene: HLA-DRB1

Molecule: alpha3(135-145)-HLA-DRB1*15:01

3D Structure

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Related Domains

Browse other domains in MHC_II_beta →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMHC antigen-recognition domain(233)

HH-groupMHC antigen-recognition domain(233.1)

TT-groupMHC antigen-recognition domain(233.1.1)

FFamilyMHC_II_beta(233.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00969MHC_II_beta

Class II histocompatibility antigen, beta domain

ClanCL0343MHC

External Links

ECOD PDB View: 5V4M RCSB PDB: 5V4M PDBe: 5V4M UniProt: P01911

Downloads

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