ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4j4hB2 - ECOD Domain | ECOD

ECOD/Domains/e4j4hB2

e4j4hB2

UID: 002617829

PDB

Range: B:1-121
PDB: 4J4H chain B(all domains)
UniProt: Q46E80 (all domains)
Gene: pylD

Molecule: PylD

3D Structure

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Related Domains

Browse other domains in PylD_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupClass I glutamine amidotransferase-like(2007.1.1)

FFamilyPylD_N(2007.1.1.21)

Ligands

in contact, ≤ 4 Å

NADHNAI
drugDrugBank DB00157
N~6~-[(2R)-3,4-dihydro-2H-pyrrol-2-ylcarbonyl]-L-lysine1J1

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Pyrrolysine biosynthesis protein PylD, N-terminal domain

ClanCL0014Glutaminase_I

External Links

ECOD PDB View: 4J4H RCSB PDB: 4J4H PDBe: 4J4H UniProt: Q46E80

Downloads

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