ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6vmfA1 - ECOD Domain | ECOD

ECOD/Domains/e6vmfA1

e6vmfA1

UID: 002618872

PDB

Range: A:4-60,A:88-363
PDB: 6VMF chain A(all domains)
UniProt: A0A161XU12 (all domains)
Gene: N475_19905

Molecule: Glycine oxidase

3D Structure

Loading viewer...

Related Domains

Browse other domains in LodA_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyLodA_N(11.1.1.255)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

L-Lysine epsilon oxidase N-terminal

ClanCL0159E-set

External Links

ECOD PDB View: 6VMF RCSB PDB: 6VMF PDBe: 6VMF UniProt: A0A161XU12

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure