ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6yc0D1 - ECOD Domain | ECOD

ECOD/Domains/e6yc0D1

e6yc0D1

UID: 002619069

PDB

Range: D:3-271
PDB: 6YC0 chain D(all domains)
UniProt: N0DKS8 (all domains)
Gene: NaR

Molecule: Sodium pumping rhodopsin

3D Structure

Loading viewer...

Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

EicosaneLFA
Sodium ionNA
metal
Oleic acidOLA
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 6YC0 RCSB PDB: 6YC0 PDBe: 6YC0 UniProt: N0DKS8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

RetinalRET

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.