ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wgmA1 - ECOD Domain | ECOD

ECOD/Domains/e6wgmA1

e6wgmA1

UID: 002623957

PDB

Range: A:142-229
PDB: 6WGM chain A(all domains)
UniProt: G5ZWD6 (all domains)

Molecule: TRAP-type C4-dicarboxylate transport system, periplasmic component

3D Structure

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Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

Pidolic acidPCA
drugDrugBank DB03088

+ 2 additives (Formic acid, 1,2-ETHANEDIOL)

Formic acidFMT
DrugBank DB01942

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 6WGM RCSB PDB: 6WGM PDBe: 6WGM UniProt: G5ZWD6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.