ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wlcA1 - ECOD Domain | ECOD

ECOD/Domains/e6wlcA1

e6wlcA1

UID: 002623965

PDB

Range: A:170-327
PDB: 6WLC chain A(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Uridylate-specific endoribonuclease

3D Structure

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Related Domains

Browse other domains in CoV_NSP15_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupRNase A-like(372)

HH-groupEndoU-like(372.2)

TT-groupEndoU-like(372.2.1)

FFamilyCoV_NSP15_C(372.2.1.2)

Ligands

in contact, ≤ 4 Å

Uridine monophosphateU5P
drugDrugBank DB03685

+ 3 additives (Acetate, Sulfate ion, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511

Pfam Families

PF19215CoV_NSP15_C

Coronavirus replicase NSP15, uridylate-specific endoribonuclease

ClanCL0695EndoU

External Links

ECOD PDB View: 6WLC RCSB PDB: 6WLC PDBe: 6WLC UniProt: P0DTD1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.