ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6v5tE1 - ECOD Domain | ECOD

ECOD/Domains/e6v5tE1

e6v5tE1

UID: 002628066

PDB

Range: E:1C-247
PDB: 6V5T chain E(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: Prothrombin

3D Structure

Loading viewer...

Related Domains

Browse other domains in Trypsin,Thrombin_light →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyTrypsin,Thrombin_light(1.1.5.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

PF09396Thrombin_light

Thrombin light chain

External Links

ECOD PDB View: 6V5T RCSB PDB: 6V5T PDBe: 6V5T UniProt: P00734

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure