ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6vodB1 - ECOD Domain | ECOD

ECOD/Domains/e6vodB1

e6vodB1

UID: 002628693

PDB

Range: B:1-99
PDB: 6VOD chain B(all domains)
UniProt: Q5RZ08 (all domains)
Gene: pol

Molecule: Protease

3D Structure

Loading viewer...

Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(1R,3aS,5R,6S,7aR)-octahydro-1,6-epoxy-2-benzofuran-5-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamateT1R

+ 1 additive (Formic acid)

Formic acidFMT

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 6VOD RCSB PDB: 6VOD PDBe: 6VOD UniProt: Q5RZ08

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.