ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kbdA2 - ECOD Domain | ECOD

ECOD/Domains/e6kbdA2

e6kbdA2

UID: 002629714

PDB

Range: A:490-493,A:547-725
PDB: 6KBD chain A(all domains)
UniProt: P71629 (all domains)
Gene: cas10

Molecule: CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A),CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A)

3D Structure

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Related Domains

Browse other domains in Cas10-Cmr2_palm2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyCas10-Cmr2_palm2(304.48.1.31)

Ligands

in contact, ≤ 4 Å

dATPDTP
drugDrugBank DB03222
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22335Cas10-Cmr2_palm2

Cas10/Cmr2, second palm domain

ClanCL0276Nucleot_cyclase

External Links

ECOD PDB View: 6KBD RCSB PDB: 6KBD PDBe: 6KBD UniProt: P71629

Downloads

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