ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kdrA1 - ECOD Domain | ECOD

ECOD/Domains/e6kdrA1

e6kdrA1

UID: 002629787

PDB

Range: A:59-278
PDB: 6KDR chain A(all domains)
UniProt: Q5VVY1 (all domains)
Gene: NTMT2

Molecule: Alpha N-terminal protein methyltransferase 1B

3D Structure

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Related Domains

Browse other domains in Methyltransf_PK →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_PK(2003.1.5.52)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
Chloride ionCL

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF05891Methyltransf_PK

AdoMet dependent proline di-methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6KDR RCSB PDB: 6KDR PDBe: 6KDR UniProt: Q5VVY1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.