ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6lgdA1 - ECOD Domain | ECOD

ECOD/Domains/e6lgdA1

e6lgdA1

UID: 002630339

PDB

Range: A:37-275,A:295-519
PDB: 6LGD chain A(all domains)
UniProt: H9J974 (all domains)

Molecule: Sucrose hydrolase

3D Structure

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Related Domains

Browse other domains in Alpha-amylase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAlpha-amylase(2002.1.1.4)

Ligands

in contact, ≤ 4 Å

1,4-DIDEOXY-1,4-IMINO-D-ARABINITOL1AB
Calcium ionCA
metal
Magnesium ionMG

Pfam Families

PF00128Alpha-amylase

Alpha amylase, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 6LGD RCSB PDB: 6LGD PDBe: 6LGD UniProt: H9J974

Downloads

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metal

+ 2 additives (Glycerin, Triethylene glycol)

GlycerinGOL
DrugBank DB09462
Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.