ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p1zE1 - ECOD Domain | ECOD

ECOD/Domains/e6p1zE1

e6p1zE1

UID: 002631809

PDB

Range: E:484-575
PDB: 6P1Z chain E(all domains)
UniProt: P16009 (all domains)
Gene: 5

Molecule: Baseplate central spike complex protein gp5

3D Structure

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Related Domains

Browse other domains in Gp5_trimer_C →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupPhage tail fiber protein trimerization domain(79)

HH-groupPhage tail fiber protein trimerization domain(79.1)

TT-groupPhage tail fiber protein trimerization domain(79.1.1)

FFamilyGp5_trimer_C(79.1.1.13)

Ligands

in contact, ≤ 4 Å

Oleic AcidELA
drugDrugBank DB04224
Palmitic AcidPLM
drugDrugBank DB03796
Stearic acid

Pfam Families

PF22178Gp5_trimer_C

Bacteriophage T4 gp5 C-terminal trimerisation domain

ClanCL0606Phage_fibre

External Links

ECOD PDB View: 6P1Z RCSB PDB: 6P1Z PDBe: 6P1Z UniProt: P16009

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03193

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.